STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS40108.1Choline dehydrogenase. (533 aa)    
Predicted Functional Partners:
SIS87004.1
WD-40 repeat-containing protein.
    
 0.886
SIS93525.1
Hypothetical protein.
    
 0.776
SIT09969.1
Hypothetical protein.
    
 0.776
SIS47283.1
Hypothetical protein.
    
  0.665
SIS66160.1
Tetratricopeptide repeat-containing protein.
    
  0.665
SIS75168.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
    
  0.665
SIS87252.1
Ca-activated chloride channel family protein.
    
  0.665
SIS87507.1
Tetratricopeptide repeat-containing protein.
    
  0.665
SIS62318.1
Cytochrome c.
  
 
 0.645
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
 0.634
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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