Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SIS47393.1 | dnaG | SAMN05421760_101993 | SAMN05421760_101992 | Hypothetical protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.747 |
| SIS47393.1 | rpmE | SAMN05421760_101993 | SAMN05421760_101529 | Hypothetical protein. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.520 |
| SIS47393.1 | rpoD | SAMN05421760_101993 | SAMN05421760_101991 | Hypothetical protein. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.525 |
| SIS47393.1 | rpsO | SAMN05421760_101993 | SAMN05421760_11620 | Hypothetical protein. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.576 |
| SIS47393.1 | rpsU | SAMN05421760_101993 | SAMN05421760_101994 | Hypothetical protein. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.966 |
| SIS47393.1 | tsaD | SAMN05421760_101993 | SAMN05421760_101995 | Hypothetical protein. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.509 |
| dnaG | SIS47393.1 | SAMN05421760_101992 | SAMN05421760_101993 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Hypothetical protein. | 0.747 |
| dnaG | rpmE | SAMN05421760_101992 | SAMN05421760_101529 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.475 |
| dnaG | rpoD | SAMN05421760_101992 | SAMN05421760_101991 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.958 |
| dnaG | rpsU | SAMN05421760_101992 | SAMN05421760_101994 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.765 |
| dnaG | tsaD | SAMN05421760_101992 | SAMN05421760_101995 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.732 |
| rpmE | SIS47393.1 | SAMN05421760_101529 | SAMN05421760_101993 | LSU ribosomal protein L31P; Binds the 23S rRNA. | Hypothetical protein. | 0.520 |
| rpmE | dnaG | SAMN05421760_101529 | SAMN05421760_101992 | LSU ribosomal protein L31P; Binds the 23S rRNA. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.475 |
| rpmE | rpsO | SAMN05421760_101529 | SAMN05421760_11620 | LSU ribosomal protein L31P; Binds the 23S rRNA. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.995 |
| rpmE | rpsU | SAMN05421760_101529 | SAMN05421760_101994 | LSU ribosomal protein L31P; Binds the 23S rRNA. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.992 |
| rpoD | SIS47393.1 | SAMN05421760_101991 | SAMN05421760_101993 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | Hypothetical protein. | 0.525 |
| rpoD | dnaG | SAMN05421760_101991 | SAMN05421760_101992 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.958 |
| rpoD | rpsO | SAMN05421760_101991 | SAMN05421760_11620 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.497 |
| rpoD | rpsU | SAMN05421760_101991 | SAMN05421760_101994 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.559 |
| rpoD | tsaD | SAMN05421760_101991 | SAMN05421760_101995 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.531 |
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