Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS40682.1 | SIS53784.1 | SAMN05421760_101144 | SAMN05421760_10256 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Acyl-CoA dehydrogenase. | 0.899 |
SIS40682.1 | SIS53845.1 | SAMN05421760_101144 | SAMN05421760_10259 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | fatty-acyl-CoA synthase. | 0.760 |
SIS40682.1 | SIS75025.1 | SAMN05421760_101144 | SAMN05421760_104160 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | PAS domain S-box-containing protein. | 0.545 |
SIS40682.1 | SIS94394.1 | SAMN05421760_101144 | SAMN05421760_108115 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.962 |
SIS40682.1 | SIS95054.1 | SAMN05421760_101144 | SAMN05421760_108166 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Acyl-CoA dehydrogenase. | 0.899 |
SIS40682.1 | rplF | SAMN05421760_101144 | SAMN05421760_10671 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.587 |
SIS53784.1 | SIS40682.1 | SAMN05421760_10256 | SAMN05421760_101144 | Acyl-CoA dehydrogenase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.899 |
SIS53784.1 | SIS53845.1 | SAMN05421760_10256 | SAMN05421760_10259 | Acyl-CoA dehydrogenase. | fatty-acyl-CoA synthase. | 0.680 |
SIS53784.1 | SIS94394.1 | SAMN05421760_10256 | SAMN05421760_108115 | Acyl-CoA dehydrogenase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.957 |
SIS53845.1 | SIS40682.1 | SAMN05421760_10259 | SAMN05421760_101144 | fatty-acyl-CoA synthase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.760 |
SIS53845.1 | SIS53784.1 | SAMN05421760_10259 | SAMN05421760_10256 | fatty-acyl-CoA synthase. | Acyl-CoA dehydrogenase. | 0.680 |
SIS53845.1 | SIS75025.1 | SAMN05421760_10259 | SAMN05421760_104160 | fatty-acyl-CoA synthase. | PAS domain S-box-containing protein. | 0.669 |
SIS53845.1 | SIS94394.1 | SAMN05421760_10259 | SAMN05421760_108115 | fatty-acyl-CoA synthase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.675 |
SIS53845.1 | SIS95054.1 | SAMN05421760_10259 | SAMN05421760_108166 | fatty-acyl-CoA synthase. | Acyl-CoA dehydrogenase. | 0.680 |
SIS53845.1 | rplC | SAMN05421760_10259 | SAMN05421760_10686 | fatty-acyl-CoA synthase. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.689 |
SIS53845.1 | rplF | SAMN05421760_10259 | SAMN05421760_10671 | fatty-acyl-CoA synthase. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.781 |
SIS53845.1 | rplM | SAMN05421760_10259 | SAMN05421760_11443 | fatty-acyl-CoA synthase. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.694 |
SIS53845.1 | rplO | SAMN05421760_10259 | SAMN05421760_10667 | fatty-acyl-CoA synthase. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.691 |
SIS53845.1 | rplX | SAMN05421760_10259 | SAMN05421760_10675 | fatty-acyl-CoA synthase. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.685 |
SIS75025.1 | SIS40682.1 | SAMN05421760_104160 | SAMN05421760_101144 | PAS domain S-box-containing protein. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.545 |
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