STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS80691.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (336 aa)    
Predicted Functional Partners:
SIS80681.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.919
SIS80666.1
TRAP transporter, DctM subunit.
 
    0.912
SIT02510.1
TRAP transporter, DctM subunit.
  
    0.782
SIS69855.1
TRAP transporter, DctM subunit.
  
    0.776
SIS75450.1
TRAP transporter, DctM subunit.
  
    0.764
SIS86862.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.762
SIS94027.1
TRAP transporter, DctM subunit.
  
    0.737
SIS69984.1
TRAP transporter, DctM subunit.
  
    0.719
SIS46495.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.714
SIS94916.1
TRAP transporter, DctM subunit.
  
    0.710
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.