STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS92949.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (353 aa)    
Predicted Functional Partners:
SIS92976.1
TRAP transporter, DctM subunit.
 
    0.904
SIS92961.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.901
SIS54899.1
TRAP transporter, DctM subunit.
 
    0.779
SIT09104.1
TRAP transporter, DctM subunit.
 
    0.779
SIT08838.1
TRAP transporter, DctM subunit.
 
    0.778
SIS39894.1
TRAP transporter, DctM subunit.
 
    0.777
SIS39887.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.766
SIT09119.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.764
SIS54917.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.762
SIT08852.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.761
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.