STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS99406.1E3 Ubiquitin ligase. (312 aa)    
Predicted Functional Partners:
SIS99418.1
LemA protein.
 
    0.916
SIS96758.1
Hypothetical protein.
  
     0.552
SIS85174.1
Type IV pilus assembly protein PilY1.
  
     0.550
SIS85190.1
Type IV pilus assembly protein PilX.
  
     0.452
SIS99430.1
Protein of unknown function.
       0.448
SIS43737.1
Type IV pilus assembly protein PilO.
  
     0.429
SIS94684.1
Hypothetical protein.
  
     0.428
SIS43728.1
Type IV pilus assembly protein PilN.
  
     0.415
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.