STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT01977.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
SIS55271.1
LysR family transcriptional regulator, regulator for metE and metH; Belongs to the LysR transcriptional regulatory family.
  
     0.772
SIS54187.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.772
SIS43441.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.768
SIS45704.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.766
SIT03267.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.764
SIS69810.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.763
SIT01932.1
Peptide/nickel transport system permease protein.
       0.762
SIT01945.1
Peptide/nickel transport system permease protein.
       0.762
SIT01962.1
Peptide/nickel transport system ATP-binding protein/glutathione transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.762
SIS75415.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.761
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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