STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT02134.1Amino acid ABC transporter substrate-binding protein, PAAT family. (291 aa)    
Predicted Functional Partners:
SIS66613.1
HAMP domain-containing protein.
  
  
 0.867
SIS75025.1
PAS domain S-box-containing protein.
  
 
 0.827
SIT02121.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.775
SIS44506.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.699
aroA-2
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
 0.693
SIS92777.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
 0.692
SIS99326.1
Hpt sensor hybrid histidine kinase.
    
 0.692
SIS46891.1
PAS domain S-box-containing protein.
  
 0.662
SIT08686.1
Chorismate mutase.
     
 0.662
SIS41088.1
PAS domain S-box-containing protein.
    
 0.604
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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