STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT02499.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (332 aa)    
Predicted Functional Partners:
SIT02522.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.932
SIT02510.1
TRAP transporter, DctM subunit.
 
    0.920
SIT02484.1
Glycine/D-amino acid oxidase.
 
     0.806
SIT02459.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
     0.793
SIT02469.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
     0.768
SIS80666.1
TRAP transporter, DctM subunit.
  
    0.762
SIS69855.1
TRAP transporter, DctM subunit.
  
    0.705
SIS86862.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.666
SIS80681.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.621
SIS86875.1
C4-dicarboxylate transporter, DctQ subunit.
 
  
 0.531
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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