STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT05143.1Putative PEP-CTERM system TPR-repeat lipoprotein. (935 aa)    
Predicted Functional Partners:
SIS75168.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
  
0.919
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.899
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.889
SIS44506.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 
 0.857
SIS47668.1
Probable O-glycosylation ligase, exosortase A-associated.
 
  
 0.820
SIS47556.1
Polysaccharide export outer membrane protein.
 
  
 0.806
SIS47979.1
Uncharacterised nucleotidyltransferase.
 
  
 0.802
SIS47565.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
     0.799
SIS47623.1
Exosortase A.
 
     0.798
SIS47614.1
Sugar transferase, PEP-CTERM/EpsH1 system associated.
 
  
  0.795
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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