STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT07855.1Hypothetical protein. (189 aa)    
Predicted Functional Partners:
SIT07843.1
HupE / UreJ protein.
     0.954
SIS65664.1
HupE / UreJ protein.
     0.819
SIT07807.1
META domain-containing protein.
 
     0.622
SIT07872.1
Hypothetical protein.
       0.601
SIT07824.1
Hypothetical protein.
       0.593
SIT07790.1
Predicted transcriptional regulator.
 
     0.549
SIT07888.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.495
SIS75460.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.423
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.