STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT09146.1Transcriptional regulator, IclR family. (260 aa)    
Predicted Functional Partners:
SIS40682.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.886
SIS43293.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.747
SIS91451.1
Phosphate acetyltransferase.
    
 0.714
SIS43300.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.621
SIS61211.1
Indolepyruvate ferredoxin oxidoreductase.
    
  0.600
SIS62570.1
Indolepyruvate ferredoxin oxidoreductase.
    
  0.600
SIT09159.1
Holin-like protein.
       0.493
SIT09175.1
TIGR00659 family protein.
       0.493
SIS43277.1
Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family.
  
    0.473
sucD
succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
  
  0.456
Your Current Organism:
Neptunomonas antarctica
NCBI taxonomy Id: 619304
Other names: CCTCC AB 209086, KACC 14056, N. antarctica, Neptunomonas antarctica Zhang et al. 2010, Neptunomonas sp. S3-22, strain S3-22
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