STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX54158.1Sigma factor regulatory protein, FecR/PupR family; Pfam: PF04773; InterPro: IPR006860. (334 aa)    
Predicted Functional Partners:
EEX54159.1
RNA polymerase sigma-70 factor; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.846
EEX54157.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07660,PF07715,PF00593; InterPro: IPR000531.
 
    0.805
EEX54156.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
 
     0.697
EEX53301.1
RNA polymerase sigma-70 factor; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.675
EEX54333.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
    0.640
EEX54331.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
    0.633
EEX52774.1
Hypothetical protein.
  
 
 0.610
EEX54332.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
     0.607
EEX52694.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
     0.598
EEX54330.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
     0.589
Your Current Organism:
Prevotella sp. F0295
NCBI taxonomy Id: 619693
Other names: P. sp. oral taxon 472 str. F0295, Prevotella sp. oral taxon 472 str. F0295
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.