Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX53456.1Conserved hypothetical protein TIGR01200. (280 aa)    
Predicted Functional Partners:
EEX53458.1
Hypothetical protein.
 
     0.789
EEX51432.1
Hypothetical protein.
 
     0.775
EEX53457.1
Radical SAM domain protein; Pfam: PF04055; InterPro: IPR007197.
       0.773
EEX53074.1
Hypothetical protein.
  
     0.580
EEX52538.1
TonB-dependent receptor; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
     0.560
EEX54029.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
     0.497
EEX52656.1
TonB-linked outer membrane protein, SusC/RagA family; Pfam: PF07715,PF00593; InterPro: IPR012910.
  
     0.478
EEX54035.1
SusD family protein; Pfam: PF07980; InterPro: IPR012944.
  
     0.466
EEX53511.1
Hypothetical protein.
  
     0.459
EEX52869.1
WD40-like protein; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.452
Your Current Organism:
Prevotella sp. F0295
NCBI taxonomy Id: 619693
Other names: P. sp. oral taxon 472 str. F0295, Prevotella sp. oral taxon 472 str. F0295
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