STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T265_07509Nudix hydrolase domain-containing protein. (224 aa)    
Predicted Functional Partners:
T265_07537
mRNA_decap_C domain-containing protein.
    
 0.833
T265_13580
YjeF N-terminal domain-containing protein.
  
 0.784
T265_13995
Uncharacterized protein.
  
 0.760
T265_04375
Ge1_WD40 domain-containing protein.
    
 0.705
T265_07587
Uncharacterized protein.
   
 0.705
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.648
T265_04883
Nudix hydrolase domain-containing protein.
      
 0.636
T265_00893
Nudix hydrolase domain-containing protein.
      
 0.618
T265_03378
Sm domain-containing protein.
    
 0.598
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.598
Your Current Organism:
Opisthorchis viverrini
NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke
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