STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB80465.1Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (475 aa)    
Predicted Functional Partners:
SKB80481.1
Gliding motility-associated lipoprotein GldH.
       0.820
SKB80515.1
Penicillin-binding protein 1A.
       0.820
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
    0.743
SKB80524.1
Uncharacterized conserved protein YdiU, UPF0061 family.
       0.651
SKB90494.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
  
     0.580
SKB66078.1
Peptidase family C25.
    
   0.545
SKC06223.1
Chemotaxis protein methyltransferase CheR.
    
   0.545
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.506
SKB65989.1
DNA polymerase-3 subunit delta'.
 
   0.459
SKB80536.1
Hypothetical protein.
       0.446
Your Current Organism:
Soonwooa buanensis
NCBI taxonomy Id: 619805
Other names: CECT 7503, DSM 22323, DSM 26167, Flavobacteriaceae bacterium HM0024, KCTC 22689, S. buanensis, Soonwooa buanensis Joung et al. 2010 emend. Sirra et al. 2017, strain HM0024
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.