STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB81842.1Phytoene dehydrogenase-related protein. (524 aa)    
Predicted Functional Partners:
SKB81852.1
Indolepyruvate ferredoxin oxidoreductase beta subunit.
 
     0.915
SKB81861.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit.
 
     0.907
SKB81868.1
Kynurenine formamidase.
 
     0.850
SKB81832.1
4-hydroxybenzoyl-CoA thioesterase.
 
     0.849
SKB81912.1
Dehydrogenase (flavoprotein).
 
 
 0.839
SKB81882.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
 
     0.813
SKB65066.1
Phytoene/squalene synthetase.
 
 
 0.811
SKB81873.1
anthraniloyl-CoA monooxygenase.
 
 
 0.786
SKB81919.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
 0.620
maiA
Maleate isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
     0.560
Your Current Organism:
Soonwooa buanensis
NCBI taxonomy Id: 619805
Other names: CECT 7503, DSM 22323, DSM 26167, Flavobacteriaceae bacterium HM0024, KCTC 22689, S. buanensis, Soonwooa buanensis Joung et al. 2010 emend. Sirra et al. 2017, strain HM0024
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