STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB90017.1Outer membrane insertion C-terminal signal. (198 aa)    
Predicted Functional Partners:
SKB66821.1
Membrane protein YfhO.
  
     0.633
SKB96751.1
Carboxypeptidase regulatory-like domain-containing protein.
  
 
   0.534
SKB91695.1
Hypothetical protein.
  
     0.513
SKB83363.1
Outer membrane protein.
  
 
   0.488
SKC08312.1
BlaR1 peptidase M56.
  
     0.477
SKC11673.1
BlaR1 peptidase M56.
  
     0.475
SKB72709.1
Outer membrane protein OmpA.
  
 
   0.461
SKB90027.1
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.435
rpsU
Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
   0.425
SKB83172.1
Ig-like domain-containing protein.
  
     0.422
Your Current Organism:
Soonwooa buanensis
NCBI taxonomy Id: 619805
Other names: CECT 7503, DSM 22323, DSM 26167, Flavobacteriaceae bacterium HM0024, KCTC 22689, S. buanensis, Soonwooa buanensis Joung et al. 2010 emend. Sirra et al. 2017, strain HM0024
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