STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC04272.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (221 aa)    
Predicted Functional Partners:
SKC06196.1
Signal transduction histidine kinase.
  
 0.988
SKC04282.1
Hypothetical protein.
 
  0.971
SKC00876.1
TPR repeat-containing protein.
 
  0.878
SKB75648.1
Hypothetical protein.
 
 0.825
SKB73583.1
Signal transduction histidine kinase.
   
 0.799
SKC06191.1
PAS domain S-box-containing protein.
   
 0.676
SKC00469.1
acyl-CoA thioester hydrolase.
  
     0.577
SKB76003.1
Histidine kinase.
  
 0.537
SKB74131.1
Hypothetical protein.
  
  
  0.524
SKB82972.1
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains.
  
     0.508
Your Current Organism:
Soonwooa buanensis
NCBI taxonomy Id: 619805
Other names: CECT 7503, DSM 22323, DSM 26167, Flavobacteriaceae bacterium HM0024, KCTC 22689, S. buanensis, Soonwooa buanensis Joung et al. 2010 emend. Sirra et al. 2017, strain HM0024
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.