STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC06405.1DNA-binding transcriptional regulator, XRE-family HTH domain. (261 aa)    
Predicted Functional Partners:
SKB91478.1
DNA polymerase-3 subunit alpha.
 
     0.765
SKB64875.1
DNA polymerase-3 subunit alpha.
 
     0.738
SKB91472.1
DNA polymerase-3 subunit alpha.
 
     0.709
SKB87675.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.701
SKC06397.1
Hypothetical protein.
       0.588
SKB90425.1
Hypothetical protein.
  
     0.574
SKC02742.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
 
  0.558
SKC06415.1
Alpha/beta hydrolase family protein.
       0.519
SKB63316.1
DNA (cytosine-5)-methyltransferase 1.
  
 
 0.498
dinB
DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
     0.498
Your Current Organism:
Soonwooa buanensis
NCBI taxonomy Id: 619805
Other names: CECT 7503, DSM 22323, DSM 26167, Flavobacteriaceae bacterium HM0024, KCTC 22689, S. buanensis, Soonwooa buanensis Joung et al. 2010 emend. Sirra et al. 2017, strain HM0024
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.