STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC11673.1BlaR1 peptidase M56. (466 aa)    
Predicted Functional Partners:
SKC11664.1
Predicted transcriptional regulator.
 
 
 0.996
SKC08317.1
Predicted transcriptional regulator.
 
 
 0.981
SKB60094.1
Predicted transcriptional regulator.
 
 
 0.969
SKC08312.1
BlaR1 peptidase M56.
  
  
 
0.928
SKC06776.1
Cold shock protein, CspA family.
  
     0.604
SKB82972.1
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains.
  
     0.600
SKC11654.1
Ribosomal protein S18 acetylase RimI.
       0.561
SKC11681.1
3-oxoacid CoA-transferase subunit B.
       0.539
SKC10858.1
Helix-turn-helix domain-containing protein.
  
     0.506
SKB71577.1
Transglutaminase-like superfamily protein.
  
     0.496
Your Current Organism:
Soonwooa buanensis
NCBI taxonomy Id: 619805
Other names: CECT 7503, DSM 22323, DSM 26167, Flavobacteriaceae bacterium HM0024, KCTC 22689, S. buanensis, Soonwooa buanensis Joung et al. 2010 emend. Sirra et al. 2017, strain HM0024
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.