ENSHHUP00000001149 protein (Hucho hucho) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSHHUP00000001149

USP6 N-terminal like. (931 aa)

Predicted Functional Partners:

RAB19

0.848

ENSHHUP00000043752

0.848

ENSHHUP00000043952

0.848

ENSHHUP00000082145

0.848

ENSHHUP00000010192

0.831

ENSHHUP00000034215

0.572

ENSHHUP00000042906

0.572

ENSHHUP00000054838

0.572

ENSHHUP00000075041

0.572

ENSHHUP00000090598

0.572

Your Current Organism:

Hucho hucho

NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHHUP00000001149	ENSHHUP00000010192	ENSHHUP00000001149	ENSHHUP00000010192	USP6 N-terminal like.	RAB43, member RAS oncogene family.	0.831
ENSHHUP00000001149	ENSHHUP00000034215	ENSHHUP00000001149	ENSHHUP00000034215	USP6 N-terminal like.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.572
ENSHHUP00000001149	ENSHHUP00000042906	ENSHHUP00000001149	ENSHHUP00000042906	USP6 N-terminal like.	Uncharacterized protein.	0.572
ENSHHUP00000001149	ENSHHUP00000043752	ENSHHUP00000001149	ENSHHUP00000043752	USP6 N-terminal like.	Uncharacterized protein.	0.848
ENSHHUP00000001149	ENSHHUP00000043952	ENSHHUP00000001149	ENSHHUP00000043952	USP6 N-terminal like.	Uncharacterized protein.	0.848
ENSHHUP00000001149	ENSHHUP00000054838	ENSHHUP00000001149	ENSHHUP00000054838	USP6 N-terminal like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.572
ENSHHUP00000001149	ENSHHUP00000075041	ENSHHUP00000001149	ENSHHUP00000075041	USP6 N-terminal like.	Uncharacterized protein.	0.572
ENSHHUP00000001149	ENSHHUP00000082145	ENSHHUP00000001149	ENSHHUP00000082145	USP6 N-terminal like.	Uncharacterized protein.	0.848
ENSHHUP00000001149	ENSHHUP00000090598	ENSHHUP00000001149	ENSHHUP00000090598	USP6 N-terminal like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.572
ENSHHUP00000001149	RAB19	ENSHHUP00000001149	ENSHHUP00000018506	USP6 N-terminal like.	RAB19, member RAS oncogene family.	0.848
ENSHHUP00000010192	ENSHHUP00000001149	ENSHHUP00000010192	ENSHHUP00000001149	RAB43, member RAS oncogene family.	USP6 N-terminal like.	0.831
ENSHHUP00000034215	ENSHHUP00000001149	ENSHHUP00000034215	ENSHHUP00000001149	RAB guanine nucleotide exchange factor (GEF) 1, like.	USP6 N-terminal like.	0.572
ENSHHUP00000034215	ENSHHUP00000042906	ENSHHUP00000034215	ENSHHUP00000042906	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.882
ENSHHUP00000034215	ENSHHUP00000054838	ENSHHUP00000034215	ENSHHUP00000054838	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.861
ENSHHUP00000034215	ENSHHUP00000075041	ENSHHUP00000034215	ENSHHUP00000075041	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.757
ENSHHUP00000034215	ENSHHUP00000090598	ENSHHUP00000034215	ENSHHUP00000090598	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.861
ENSHHUP00000042906	ENSHHUP00000001149	ENSHHUP00000042906	ENSHHUP00000001149	Uncharacterized protein.	USP6 N-terminal like.	0.572
ENSHHUP00000042906	ENSHHUP00000034215	ENSHHUP00000042906	ENSHHUP00000034215	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.882
ENSHHUP00000042906	ENSHHUP00000054838	ENSHHUP00000042906	ENSHHUP00000054838	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.882
ENSHHUP00000042906	ENSHHUP00000075041	ENSHHUP00000042906	ENSHHUP00000075041	Uncharacterized protein.	Uncharacterized protein.	0.882