MTPAP protein (Hucho hucho) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MTPAP

Mitochondrial poly(A) polymerase. (318 aa)

Predicted Functional Partners:

ENSHHUP00000000676

0.820

ENSHHUP00000063336

0.820

ENSHHUP00000064719

0.764

ENSHHUP00000003815

0.745

ENSHHUP00000031442

0.727

ENSHHUP00000064296

0.727

POLR2C

0.720

ENSHHUP00000007059

0.720

ENSHHUP00000038481

0.720

ENSHHUP00000046841

0.720

Your Current Organism:

Hucho hucho

NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHHUP00000000676	ENSHHUP00000007059	ENSHHUP00000000676	ENSHHUP00000007059	RRM domain-containing protein.	RNA_pol_Rpb5_N domain-containing protein.	0.607
ENSHHUP00000000676	ENSHHUP00000031442	ENSHHUP00000000676	ENSHHUP00000031442	RRM domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.617
ENSHHUP00000000676	ENSHHUP00000038481	ENSHHUP00000000676	ENSHHUP00000038481	RRM domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.702
ENSHHUP00000000676	ENSHHUP00000046841	ENSHHUP00000000676	ENSHHUP00000046841	RRM domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide E, b.	0.607
ENSHHUP00000000676	ENSHHUP00000064296	ENSHHUP00000000676	ENSHHUP00000064296	RRM domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.617
ENSHHUP00000000676	ENSHHUP00000064719	ENSHHUP00000000676	ENSHHUP00000064719	RRM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.664
ENSHHUP00000000676	MTPAP	ENSHHUP00000000676	ENSHHUP00000001980	RRM domain-containing protein.	Mitochondrial poly(A) polymerase.	0.820
ENSHHUP00000000676	POLR2C	ENSHHUP00000000676	ENSHHUP00000002612	RRM domain-containing protein.	RNA polymerase II subunit C.	0.702
ENSHHUP00000003815	ENSHHUP00000038481	ENSHHUP00000003815	ENSHHUP00000038481	Symplekin.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.410
ENSHHUP00000003815	MTPAP	ENSHHUP00000003815	ENSHHUP00000001980	Symplekin.	Mitochondrial poly(A) polymerase.	0.745
ENSHHUP00000003815	POLR2C	ENSHHUP00000003815	ENSHHUP00000002612	Symplekin.	RNA polymerase II subunit C.	0.410
ENSHHUP00000007059	ENSHHUP00000000676	ENSHHUP00000007059	ENSHHUP00000000676	RNA_pol_Rpb5_N domain-containing protein.	RRM domain-containing protein.	0.607
ENSHHUP00000007059	ENSHHUP00000031442	ENSHHUP00000007059	ENSHHUP00000031442	RNA_pol_Rpb5_N domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.997
ENSHHUP00000007059	ENSHHUP00000038481	ENSHHUP00000007059	ENSHHUP00000038481	RNA_pol_Rpb5_N domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.997
ENSHHUP00000007059	ENSHHUP00000046841	ENSHHUP00000007059	ENSHHUP00000046841	RNA_pol_Rpb5_N domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide E, b.	0.562
ENSHHUP00000007059	ENSHHUP00000063336	ENSHHUP00000007059	ENSHHUP00000063336	RNA_pol_Rpb5_N domain-containing protein.	RRM domain-containing protein.	0.607
ENSHHUP00000007059	ENSHHUP00000064296	ENSHHUP00000007059	ENSHHUP00000064296	RNA_pol_Rpb5_N domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.997
ENSHHUP00000007059	ENSHHUP00000064719	ENSHHUP00000007059	ENSHHUP00000064719	RNA_pol_Rpb5_N domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
ENSHHUP00000007059	MTPAP	ENSHHUP00000007059	ENSHHUP00000001980	RNA_pol_Rpb5_N domain-containing protein.	Mitochondrial poly(A) polymerase.	0.720
ENSHHUP00000007059	POLR2C	ENSHHUP00000007059	ENSHHUP00000002612	RNA_pol_Rpb5_N domain-containing protein.	RNA polymerase II subunit C.	0.997