STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHHUP00000007935PRP3 pre-mRNA processing factor 3 homolog (yeast). (612 aa)    
Predicted Functional Partners:
ENSHHUP00000020261
WD_REPEATS_REGION domain-containing protein.
   
 0.998
ENSHHUP00000021442
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.998
ENSHHUP00000044921
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.998
ENSHHUP00000070751
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
 0.998
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.995
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
 0.995
ENSHHUP00000054566
Zinc finger, matrin-type 2.
   
 0.995
ENSHHUP00000047772
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.994
ENSHHUP00000078489
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.994
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.993
Your Current Organism:
Hucho hucho
NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.