STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHHUP00000034111Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (230 aa)    
Predicted Functional Partners:
CPSF7
RRM domain-containing protein.
   
 0.991
CPSF7-2
Cleavage and polyadenylation specific factor 7.
   
 0.991
ENSHHUP00000037418
Cleavage and polyadenylation specific factor 6.
   
 0.991
ENSHHUP00000014494
FIP1 like 1a (S. cerevisiae).
   
 0.988
ENSHHUP00000075371
Fip1 domain-containing protein.
   
 0.988
ENSHHUP00000011422
Cleavage and polyadenylation specific factor 4.
    
 0.977
ENSHHUP00000011961
Uncharacterized protein.
   
 0.961
YTHDC2
YTH domain containing 2.
   
 0.961
ENSHHUP00000074207
YTH domain-containing protein.
   
 0.961
ENSHHUP00000040100
PCF11, cleavage and polyadenylation factor subunit.
    
 0.947
Your Current Organism:
Hucho hucho
NCBI taxonomy Id: 62062
Other names: H. hucho, Hucho hucho hucho, huchen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.