STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_05979Nucleoporin GLE1. (483 aa)    
Predicted Functional Partners:
EGR_10112
Nuclear pore complex protein Nup155.
   
 0.969
EGR_00197
ATP-dependent RNA helicase DDX19A; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 
 0.963
EGR_02137
Nuclear pore complex protein Nup107.
    
 0.955
EGR_00573
Nuclear pore complex protein Nup54.
   
 0.934
EGR_03913
Nuclear pore complex protein Nup133.
   
 0.924
EGR_04877
Nuclear RNA export factor.
    
 0.914
EGR_04996
Nucleoporin GLE2.
   
 0.894
EGR_00172
mRNA export factor.
   
 0.894
EGR_02414
Nucleoporin seh1; Belongs to the WD repeat SEC13 family.
    
 0.891
EGR_02512
Nuclear pore protein.
   
 0.880
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.