STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_05653NSFL1 cofactor p47. (418 aa)    
Predicted Functional Partners:
EGR_01043
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.999
EGR_01738
UBX domain-containing protein 6.
    
 0.992
EGR_00077
UBX domain-containing protein 1-A.
   
 0.972
EGR_01707
UBX domain-containing protein 4.
    
 0.959
EGR_01091
Phospholipase A-2-activating protein.
    
 
 0.955
EGR_01320
Ubiquitin thioesterase.
   
 
 0.952
EGR_02465
UBX domain-containing protein 2.
    
 
 0.940
EGR_00257
Ubiquitin fusion degradation protein.
   
 
 0.939
EGR_09639
UBX domain-containing Tether.
    
 
 0.926
EGR_03373
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 
 0.914
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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