STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_09835Ubiquitin conjugation factor E4 A. (1103 aa)    
Predicted Functional Partners:
EGR_08548
Putative E3 ubiquitin-protein ligase TRIP12.
   
 0.993
EGR_02424
UV excision repair protein RAD23 B.
   
 0.969
EGR_00257
Ubiquitin fusion degradation protein.
    
 
 0.964
EGR_01043
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
  
 
 0.957
EGR_06378
Nuclear protein localization protein.
    
 
 0.945
EGR_07112
Ubiquilin-1.
   
 0.944
EGR_01320
Ubiquitin thioesterase.
    
 
 0.941
EGR_02907
FAS-associated factor 2.
   
 
 0.900
EGR_05653
NSFL1 cofactor p47.
    
 
 0.885
EGR_08951
Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.877
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.