STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_07670H/ACA ribonucleoprotein complex non-core subunit NAF1. (516 aa)    
Predicted Functional Partners:
EGR_05800
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.981
EGR_07532
H/ACA ribonucleoprotein complex subunit 2-like protein.
   
 
 0.951
EGR_07252
H/ACA ribonucleoprotein complex subunit 3.
   
 
 0.945
EGR_01007
Putative tRNA pseudouridine synthase.
   
 
 0.902
EGR_08120
tRNA selenocysteine 1-associated protein.
   
   0.831
EGR_06248
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.778
EGR_02883
Ribosomal L1 domain-containing protein.
   
  
 0.716
EGR_06960
U3 small nucleolar ribonucleoprotein MPP10.
   
 
  0.664
EGR_00628
60S ribosomal protein L7a.
   
 
 0.657
EGR_03038
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 
 0.657
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.