STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_06875Hepatocyte nuclear factor 4-alpha. (595 aa)    
Predicted Functional Partners:
EGR_05891
Pre-mRNA-splicing factor RBM22.
    
 
 0.702
EGR_02350
Mediator of RNA polymerase II transcription subunit.
    
 0.696
EGR_08462
Nuclear receptor corepressor.
    
 0.681
EGR_00781
Sterol regulatory element-binding protein.
    
 
 0.660
EGR_08428
Nuclear hormone receptor family member nhr-48.
   
0.590
EGR_02127
Serine-rich repeat protein 2.
    
 0.586
EGR_08649
Mothers against decapentaplegic homolog.
    
 
 0.576
EGR_00300
Proliferation-associated protein 2G4.
    
   0.561
EGR_05720
Mothers against decapentaplegic.
  
 
 
 0.513
EGR_07887
60S ribosomal protein L9.
    
 0.505
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.