STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_09348OTU domain-containing protein 6B. (354 aa)    
Predicted Functional Partners:
EGR_08548
Putative E3 ubiquitin-protein ligase TRIP12.
      
 0.771
EGR_01320
Ubiquitin thioesterase.
      
 0.672
EGR_06950
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.627
EGR_03720
Ubiquitin hydrolase; Belongs to the peptidase C19 family.
   
  
 0.592
EGR_02941
Ubiquitin carboxyl-terminal hydrolase.
      
 0.575
EGR_10155
Ubiquitin hydrolase; Belongs to the peptidase C19 family.
      
 0.575
EGR_04971
26S proteasome non-ATPase regulatory subunit.
   
  
 0.559
EGR_01372
COP9 signalosome complex subunit.
   
  
 0.551
EGR_04511
STAM-binding protein-like protein.
   
  
 0.546
EGR_07886
Uncharacterized protein.
      
 0.541
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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