STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_04419Serine/threonine-protein kinase PRP4. (660 aa)    
Predicted Functional Partners:
EGR_02732
Pre-mRNA-processing factor 6.
    
 
 0.940
EGR_08471
U5 small nuclear ribonucleoprotein component.
    
 
 0.891
EGR_07881
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 
 0.890
EGR_05260
Pre-mRNA-processing-splicing factor 8.
    
 
 0.870
EGR_01294
U4/U6.U5 tri-snRNP-associated protein.
   
 
 0.867
EGR_00205
U4/U6 small nuclear ribonucleoprotein Prp4.
    
 
 0.857
EGR_03450
Rna binding motif protein 25.
   
 0.840
EGR_00823
U5 small nuclear ribonucleoprotein helicase.
    
 
 0.837
EGR_02793
U4/U6.U5 tri-snRNP-associated protein 2.
    
   0.828
EGR_05934
Putative ATP-dependent RNA helicase DDX23.
 
 
 0.817
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.