STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_05318RING finger protein 113A. (985 aa)    
Predicted Functional Partners:
EGR_09672
Cell division cycle 5-related protein.
    
 
 0.982
EGR_04652
Peptidyl-prolyl cis-trans isomerase.
   
 0.981
EGR_00823
U5 small nuclear ribonucleoprotein helicase.
   
 
 0.978
EGR_03927
Pre-mRNA-splicing factor CWC22.
    
 0.975
EGR_03093
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4.
   
 0.966
EGR_04047
Pre-mRNA-processing factor.
    
 
 0.954
EGR_04826
Pre mRNA processing factor 17.
    
 0.952
EGR_04875
BUD13 protein.
    
 
 0.943
EGR_03864
Splicing factor 3B subunit 2.
    
 
 0.940
EGR_08769
Splicing factor 3A subunit 2.
    
 
 0.931
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.