STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_02132Fanconi anemia group J protein. (586 aa)    
Predicted Functional Partners:
EGR_00528
DNA topoisomerase 2-binding protein.
   
 0.983
EGR_05501
DNA mismatch repair protein.
   
 0.969
EGR_00630
Mismatch repair endonuclease PMS2.
   
 0.952
EGR_08363
Fanconi anemia group M protein.
   
 0.880
EGR_05978
BRCA1-associated RING domain protein.
   
 0.839
EGR_09762
Breast cancer type 1 susceptibility protein.
   
 0.817
EGR_04548
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.814
EGR_02388
General transcription factor IIH subunit.
    
 0.803
EGR_06711
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.802
EGR_07680
CDK-activating kinase assembly factor MAT1.
    
 0.798
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.