STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_00227Putative ATP-dependent RNA helicase DDX20. (2200 aa)    
Predicted Functional Partners:
EGR_01683
Survival of motor neuron protein-interacting protein.
   
 0.851
EGR_03685
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.825
EGR_02428
U6 snRNA-associated Sm-like protein LSm1.
   
 0.803
EGR_02746
Serine-threonine kinase receptor-associated protein.
   
 
 0.797
EGR_03805
Putative small nuclear ribonucleoprotein F.
   
 0.794
EGR_09977
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.788
EGR_00633
Small nuclear ribonucleoprotein Sm D3.
   
 0.753
EGR_04790
Small nuclear ribonucleoprotein Sm D2.
   
 0.752
EGR_01674
Small nuclear ribonucleoprotein G.
   
 0.750
EGR_03240
Snurportin-1.
   
 0.741
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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