STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGR_05629E3 ubiquitin-protein ligase parkin. (397 aa)    
Predicted Functional Partners:
EGR_03981
Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.997
EGR_08474
E3 ubiquitin-protein ligase mind-bomb.
    
 0.996
EGR_00261
40S ribosomal protein S27a.
    
 0.993
EGR_06107
Ubiquitin.
    
 0.990
EGR_09307
Mitochondrial Rho GTPase.
    
 0.980
EGR_09510
Ataxin-3.
    
 0.957
EGR_11215
Ubiquitin.
    
 0.948
EGR_00625
Ubiquitin.
    
 0.948
EGR_07383
Protein DJ-1.
    
 0.937
EGR_00906
Ubiquitin-conjugating enzyme E2 L3.
    
 0.915
Your Current Organism:
Echinococcus granulosus
NCBI taxonomy Id: 6210
Other names: E. granulosus, Echinococcus granulosus G1 strain, Echinococcus granulosus G2 strain, Echinococcus granulosus G3 strain, Echinococcus granulosus Tasmanian sheep strain, Echinococcus granulosus buffalo strain, Echinococcus granulosus s. s., Echinococcus granulosus sensu stricto, Echinococcus granulosus sheep strain
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