STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EmuJ_000889900tRNA pseudouridine synthase A mitochondrial. (412 aa)    
Predicted Functional Partners:
EmuJ_000063500
Dyskeratosis congenita 1 dyskerin.
  
 0.951
EmuJ_000204000
tRNA guanine N7 methyltransferase subunit.
   
 
 0.919
EmuJ_000467500
Trna pseudouridine synthase 2.
  
 0.897
EmuJ_000434920
Mitochondrial ribosomal protein L17.
  
  
 0.889
EmuJ_001127300
Translocation protein SEC63.
      
 0.889
EmuJ_000860800
DNA directed RNA polymerases I and III subunit.
  
  
 0.846
A0A087W4V9
DNA directed RNA polymerase II subunit RPB3.
  
  
 0.846
EmuJ_000767100
tRNA pseudouridine synthase D.
  
 
 0.820
EmuJ_001051300
Ribosome biolocus tagsis protein wdr12.
   
   0.805
EmuJ_000127400
RNA helicase.
  
  
 0.787
Your Current Organism:
Echinococcus multilocularis
NCBI taxonomy Id: 6211
Other names: E. multilocularis
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.