Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EmuJ_000078600 | EmuJ_000149300 | A0A087VXZ0 | A0A087VZB1 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | DNA polymerase. | 0.774 |
EmuJ_000078600 | EmuJ_000741400 | A0A087VXZ0 | A0A068Y503 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | Fanconi anemia group M protein. | 0.836 |
EmuJ_000078600 | EmuJ_000822900 | A0A087VXZ0 | A0A068YEJ1 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.595 |
EmuJ_000078600 | EmuJ_000855500 | A0A087VXZ0 | A0A068Y8W1 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.929 |
EmuJ_000078600 | EmuJ_001020100 | A0A087VXZ0 | A0A068YD96 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | DNA repair protein XRCC1. | 0.811 |
EmuJ_000078600 | EmuJ_001062100 | A0A087VXZ0 | A0A068YEB1 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | N glycosylase:DNA lyase. | 0.948 |
EmuJ_000078600 | EmuJ_001106600 | A0A087VXZ0 | A0A068YMB0 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | Dna polymerase eta. | 0.521 |
EmuJ_000078600 | FEN1 | A0A087VXZ0 | A0A068Y6N4 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.975 |
EmuJ_000078600 | NTH1 | A0A087VXZ0 | A0A068YM63 | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. | 0.996 |
EmuJ_000149300 | EmuJ_000078600 | A0A087VZB1 | A0A087VXZ0 | DNA polymerase. | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | 0.774 |
EmuJ_000149300 | EmuJ_000741400 | A0A087VZB1 | A0A068Y503 | DNA polymerase. | Fanconi anemia group M protein. | 0.999 |
EmuJ_000149300 | EmuJ_000822900 | A0A087VZB1 | A0A068YEJ1 | DNA polymerase. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.741 |
EmuJ_000149300 | EmuJ_000855500 | A0A087VZB1 | A0A068Y8W1 | DNA polymerase. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.563 |
EmuJ_000149300 | EmuJ_001020100 | A0A087VZB1 | A0A068YD96 | DNA polymerase. | DNA repair protein XRCC1. | 0.624 |
EmuJ_000149300 | EmuJ_001062100 | A0A087VZB1 | A0A068YEB1 | DNA polymerase. | N glycosylase:DNA lyase. | 0.722 |
EmuJ_000149300 | EmuJ_001106600 | A0A087VZB1 | A0A068YMB0 | DNA polymerase. | Dna polymerase eta. | 0.985 |
EmuJ_000149300 | FEN1 | A0A087VZB1 | A0A068Y6N4 | DNA polymerase. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.881 |
EmuJ_000149300 | NTH1 | A0A087VZB1 | A0A068YM63 | DNA polymerase. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. | 0.637 |
EmuJ_000379800 | EmuJ_001062100 | A0A068XWP3 | A0A068YEB1 | Haloacid dehalogenase hydrolase. | N glycosylase:DNA lyase. | 0.696 |
EmuJ_000741400 | EmuJ_000078600 | A0A068Y503 | A0A087VXZ0 | Fanconi anemia group M protein. | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | 0.836 |
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