EmuJ_001023550 protein (Echinococcus multilocularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EmuJ_001023550

Uncharacterized protein. (220 aa)

Predicted Functional Partners:

EmuJ_000520000

0.814

EmuJ_000976100

0.773

EmuJ_001126100

0.764

EmuJ_000431000

0.750

EmuJ_000091000

0.750

A0A068Y2V0

0.745

EmuJ_000726300

0.745

EmuJ_001130100

0.736

EmuJ_000855200

0.731

EmuJ_000856900

0.729

Your Current Organism:

Echinococcus multilocularis

NCBI taxonomy Id: 6211
Other names: E. multilocularis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A068Y2V0	EmuJ_000091000	A0A068Y2V0	A0A087VY85	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	Bystin.	0.947
A0A068Y2V0	EmuJ_000431000	A0A068Y2V0	A0A068XXE1	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	Pre rRNA processing protein TSR1.	0.932
A0A068Y2V0	EmuJ_000520000	A0A068Y2V0	A0A068Y6M9	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	Glutamyl tRNA synthetase cytoplasmic.	0.873
A0A068Y2V0	EmuJ_000726300	A0A068Y2V0	A0A068YBX4	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.839
A0A068Y2V0	EmuJ_000855200	A0A068Y2V0	A0A068Y837	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A068Y2V0	EmuJ_000856900	A0A068Y2V0	A0A068YCH8	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.995
A0A068Y2V0	EmuJ_000976100	A0A068Y2V0	A0A068YB97	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	TRM112 protein.	0.507
A0A068Y2V0	EmuJ_001023550	A0A068Y2V0	A0A068YK35	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.745
A0A068Y2V0	EmuJ_001130100	A0A068Y2V0	A0A068YJW7	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	RNA binding protein NOB1.	0.927
EmuJ_000091000	A0A068Y2V0	A0A087VY85	A0A068Y2V0	Bystin.	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	0.947
EmuJ_000091000	EmuJ_000431000	A0A087VY85	A0A068XXE1	Bystin.	Pre rRNA processing protein TSR1.	0.999
EmuJ_000091000	EmuJ_000726300	A0A087VY85	A0A068YBX4	Bystin.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.997
EmuJ_000091000	EmuJ_000855200	A0A087VY85	A0A068Y837	Bystin.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.993
EmuJ_000091000	EmuJ_000856900	A0A087VY85	A0A068YCH8	Bystin.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.993
EmuJ_000091000	EmuJ_000976100	A0A087VY85	A0A068YB97	Bystin.	TRM112 protein.	0.820
EmuJ_000091000	EmuJ_001023550	A0A087VY85	A0A068YK35	Bystin.	Uncharacterized protein.	0.750
EmuJ_000091000	EmuJ_001130100	A0A087VY85	A0A068YJW7	Bystin.	RNA binding protein NOB1.	0.999
EmuJ_000431000	A0A068Y2V0	A0A068XXE1	A0A068Y2V0	Pre rRNA processing protein TSR1.	28S ribosomal protein S5 mitochondrial; Belongs to the universal ribosomal protein uS5 family.	0.932
EmuJ_000431000	EmuJ_000091000	A0A068XXE1	A0A087VY85	Pre rRNA processing protein TSR1.	Bystin.	0.999
EmuJ_000431000	EmuJ_000726300	A0A068XXE1	A0A068YBX4	Pre rRNA processing protein TSR1.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.983