HDID_LOCUS2537 protein (Hymenolepis diminuta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HDID_LOCUS2537

Dynein light chain. (91 aa)

Predicted Functional Partners:

HDID_LOCUS343

0.705

HDID_LOCUS1601

0.694

HDID_LOCUS8664

0.694

A0A158QGA0

0.694

HDID_LOCUS8175

0.675

HDID_LOCUS3875

0.650

HDID_LOCUS2229

0.645

HDID_LOCUS9504

0.645

HDID_LOCUS8305

0.609

A0A0R3SL92

0.601

Your Current Organism:

Hymenolepis diminuta

NCBI taxonomy Id: 6216
Other names: H. diminuta, rat tapeworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3SL92	A0A158QGA0	A0A0R3SL92	A0A158QGA0	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein.	0.981
A0A0R3SL92	HDID_LOCUS1601	A0A0R3SL92	A0A0R3SB12	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	WD_REPEATS_REGION domain-containing protein.	0.972
A0A0R3SL92	HDID_LOCUS2229	A0A0R3SL92	A0A0R3SCD8	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Robl_LC7 domain-containing protein.	0.860
A0A0R3SL92	HDID_LOCUS2537	A0A0R3SL92	A0A0R3SD17	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Dynein light chain.	0.601
A0A0R3SL92	HDID_LOCUS343	A0A0R3SL92	A0A0R3S890	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein.	0.911
A0A0R3SL92	HDID_LOCUS8175	A0A0R3SL92	A0A0R3SSC1	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	CAP-Gly domain-containing protein.	0.947
A0A0R3SL92	HDID_LOCUS8305	A0A0R3SL92	A0A0R3SSM0	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein; Belongs to the actin family.	0.832
A0A0R3SL92	HDID_LOCUS8664	A0A0R3SL92	A0A158QFD1	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	WD_REPEATS_REGION domain-containing protein.	0.856
A0A0R3SL92	HDID_LOCUS9504	A0A0R3SL92	A0A0R3SVB6	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Dynein light chain roadblock.	0.906
A0A158QGA0	A0A0R3SL92	A0A158QGA0	A0A0R3SL92	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.981
A0A158QGA0	HDID_LOCUS1601	A0A158QGA0	A0A0R3SB12	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.948
A0A158QGA0	HDID_LOCUS2229	A0A158QGA0	A0A0R3SCD8	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.906
A0A158QGA0	HDID_LOCUS2537	A0A158QGA0	A0A0R3SD17	Uncharacterized protein.	Dynein light chain.	0.694
A0A158QGA0	HDID_LOCUS343	A0A158QGA0	A0A0R3S890	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A158QGA0	HDID_LOCUS8175	A0A158QGA0	A0A0R3SSC1	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.945
A0A158QGA0	HDID_LOCUS8305	A0A158QGA0	A0A0R3SSM0	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.865
A0A158QGA0	HDID_LOCUS9504	A0A158QGA0	A0A0R3SVB6	Uncharacterized protein.	Dynein light chain roadblock.	0.937
HDID_LOCUS1601	A0A0R3SL92	A0A0R3SB12	A0A0R3SL92	WD_REPEATS_REGION domain-containing protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.972
HDID_LOCUS1601	A0A158QGA0	A0A0R3SB12	A0A158QGA0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.948
HDID_LOCUS1601	HDID_LOCUS2229	A0A0R3SB12	A0A0R3SCD8	WD_REPEATS_REGION domain-containing protein.	Robl_LC7 domain-containing protein.	0.906