HDID_LOCUS6773 protein (Hymenolepis diminuta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HDID_LOCUS6773

Uncharacterized protein; Belongs to the tubulin family. (407 aa)

Predicted Functional Partners:

HDID_LOCUS4888

0.946

HDID_LOCUS9220

0.946

HDID_LOCUS3060

0.944

HDID_LOCUS1601

0.922

A0A158QGA0

0.918

HDID_LOCUS1524

0.889

A0A158QE53

0.841

HDID_LOCUS810

0.808

A0A0R3SL92

0.805

HDID_LOCUS5991

0.805

Your Current Organism:

Hymenolepis diminuta

NCBI taxonomy Id: 6216
Other names: H. diminuta, rat tapeworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3SL92	A0A158QGA0	A0A0R3SL92	A0A158QGA0	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein.	0.981
A0A0R3SL92	HDID_LOCUS1524	A0A0R3SL92	A0A0R3SAV4	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein.	0.955
A0A0R3SL92	HDID_LOCUS1601	A0A0R3SL92	A0A0R3SB12	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	WD_REPEATS_REGION domain-containing protein.	0.972
A0A0R3SL92	HDID_LOCUS3060	A0A0R3SL92	A0A0R3SE84	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.755
A0A0R3SL92	HDID_LOCUS5991	A0A0R3SL92	A0A0R3SM28	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.785
A0A0R3SL92	HDID_LOCUS6773	A0A0R3SL92	A0A0R3SPA6	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Uncharacterized protein; Belongs to the tubulin family.	0.805
A0A158QE53	A0A158QGA0	A0A158QE53	A0A158QGA0	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A158QE53	HDID_LOCUS1524	A0A158QE53	A0A0R3SAV4	Uncharacterized protein.	Uncharacterized protein.	0.692
A0A158QE53	HDID_LOCUS1601	A0A158QE53	A0A0R3SB12	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.580
A0A158QE53	HDID_LOCUS3060	A0A158QE53	A0A0R3SE84	Uncharacterized protein.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.871
A0A158QE53	HDID_LOCUS4888	A0A158QE53	A0A0R3SIX5	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.871
A0A158QE53	HDID_LOCUS6773	A0A158QE53	A0A0R3SPA6	Uncharacterized protein.	Uncharacterized protein; Belongs to the tubulin family.	0.841
A0A158QE53	HDID_LOCUS810	A0A158QE53	A0A0R3S9A6	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.871
A0A158QE53	HDID_LOCUS9220	A0A158QE53	A0A0R3SUN5	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.871
A0A158QGA0	A0A0R3SL92	A0A158QGA0	A0A0R3SL92	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.981
A0A158QGA0	A0A158QE53	A0A158QGA0	A0A158QE53	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A158QGA0	HDID_LOCUS1601	A0A158QGA0	A0A0R3SB12	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.948
A0A158QGA0	HDID_LOCUS3060	A0A158QGA0	A0A0R3SE84	Uncharacterized protein.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.914
A0A158QGA0	HDID_LOCUS4888	A0A158QGA0	A0A0R3SIX5	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.918
A0A158QGA0	HDID_LOCUS5991	A0A158QGA0	A0A0R3SM28	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.981