STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDID_LOCUS7643RIO domain-containing protein. (526 aa)    
Predicted Functional Partners:
HDID_LOCUS2387
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.999
HDID_LOCUS4645
Uncharacterized protein.
   
 0.999
HDID_LOCUS2823
Uncharacterized protein.
   
 0.998
HDID_LOCUS5526
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.998
HDID_LOCUS819
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 0.997
HDID_LOCUS1832
Ribosomal_S10 domain-containing protein.
   
 0.997
HDID_LOCUS7959
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.997
HDID_LOCUS8340
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.997
A0A158QGB6
Uncharacterized protein; Belongs to the universal ribosomal protein uS7 family.
    
 0.997
HDID_LOCUS449
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
  
 0.996
Your Current Organism:
Hymenolepis diminuta
NCBI taxonomy Id: 6216
Other names: H. diminuta, rat tapeworm
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