Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SF0705 | SF0716 | SF0705 | SF0716 | Major capsid protein. | Putative tail assembly protein. | 0.938 |
SF0705 | SF1360 | SF0705 | SF1360 | Major capsid protein. | Putative tail fiber protein. | 0.808 |
SF0705 | SF2205 | SF0705 | SF2205 | Major capsid protein. | Putative tail fiber protein. | 0.808 |
SF0705 | SF2617 | SF0705 | SF2617 | Major capsid protein. | Putative tail fiber protein. | 0.808 |
SF0705 | SF2995 | SF0705 | SF2995 | Major capsid protein. | Conserved hypothetical protein. | 0.505 |
SF0705 | dgt | SF0705 | SF0152 | Major capsid protein. | Deoxyguanosine triphosphate triphosphohydrolase; dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs; Belongs to the dGTPase family. Type 1 subfamily. | 0.732 |
SF0705 | iscU | SF0705 | SF2576 | Major capsid protein. | Conserved hypothetical protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (By similarity). Belongs to the NifU family. | 0.708 |
SF0705 | ssb | SF0705 | SF4145 | Major capsid protein. | ssDNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.711 |
SF0716 | SF0705 | SF0716 | SF0705 | Putative tail assembly protein. | Major capsid protein. | 0.938 |
SF0716 | SF1360 | SF0716 | SF1360 | Putative tail assembly protein. | Putative tail fiber protein. | 0.865 |
SF0716 | SF2205 | SF0716 | SF2205 | Putative tail assembly protein. | Putative tail fiber protein. | 0.865 |
SF0716 | SF2617 | SF0716 | SF2617 | Putative tail assembly protein. | Putative tail fiber protein. | 0.865 |
SF0716 | SF2995 | SF0716 | SF2995 | Putative tail assembly protein. | Conserved hypothetical protein. | 0.580 |
SF0716 | dgt | SF0716 | SF0152 | Putative tail assembly protein. | Deoxyguanosine triphosphate triphosphohydrolase; dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs; Belongs to the dGTPase family. Type 1 subfamily. | 0.733 |
SF0716 | iscU | SF0716 | SF2576 | Putative tail assembly protein. | Conserved hypothetical protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (By similarity). Belongs to the NifU family. | 0.729 |
SF0716 | ssb | SF0716 | SF4145 | Putative tail assembly protein. | ssDNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.744 |
SF1360 | SF0705 | SF1360 | SF0705 | Putative tail fiber protein. | Major capsid protein. | 0.808 |
SF1360 | SF0716 | SF1360 | SF0716 | Putative tail fiber protein. | Putative tail assembly protein. | 0.865 |
SF1360 | SF2995 | SF1360 | SF2995 | Putative tail fiber protein. | Conserved hypothetical protein. | 0.441 |
SF1360 | dgt | SF1360 | SF0152 | Putative tail fiber protein. | Deoxyguanosine triphosphate triphosphohydrolase; dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs; Belongs to the dGTPase family. Type 1 subfamily. | 0.728 |
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