A0A182RF91 protein (Anopheles funestus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A182RF91

CSD_1 domain-containing protein. (153 aa)

Predicted Functional Partners:

A0A182R5U0

0.783

A0A182RXI4

0.781

A0A4Y0BFJ3

0.781

Q06DG7_ANOFN

0.769

A0A182RQL1

0.725

A0A182R364

0.718

A0A182RFF6

0.713

A0A182R9K9

0.710

A0A4Y0BLQ9

0.710

A0A4Y0BPW0

0.709

Your Current Organism:

Anopheles funestus

NCBI taxonomy Id: 62324
Other names: A. funestus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A182R364	A0A182R5U0	A0A182R364	A0A182R5U0	39S ribosomal protein L27, mitochondrial.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A182R364	A0A182RF91	A0A182R364	A0A182RF91	39S ribosomal protein L27, mitochondrial.	CSD_1 domain-containing protein.	0.718
A0A182R364	A0A182RXI4	A0A182R364	A0A182RXI4	39S ribosomal protein L27, mitochondrial.	OB_NTP_bind domain-containing protein.	0.975
A0A182R364	A0A4Y0BFJ3	A0A182R364	A0A4Y0BFJ3	39S ribosomal protein L27, mitochondrial.	Uncharacterized protein.	0.975
A0A182R364	Q06DG7_ANOFN	A0A182R364	Q06DG7	39S ribosomal protein L27, mitochondrial.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
A0A182R5U0	A0A182R364	A0A182R5U0	A0A182R364	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L27, mitochondrial.	0.999
A0A182R5U0	A0A182R9K9	A0A182R5U0	A0A182R9K9	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.718
A0A182R5U0	A0A182RF91	A0A182R5U0	A0A182RF91	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	CSD_1 domain-containing protein.	0.783
A0A182R5U0	A0A182RXI4	A0A182R5U0	A0A182RXI4	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	OB_NTP_bind domain-containing protein.	0.999
A0A182R5U0	A0A4Y0BFJ3	A0A182R5U0	A0A4Y0BFJ3	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
A0A182R5U0	A0A4Y0BLQ9	A0A182R5U0	A0A4Y0BLQ9	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.713
A0A182R5U0	A0A4Y0BPW0	A0A182R5U0	A0A4Y0BPW0	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.549
A0A182R5U0	Q06DG7_ANOFN	A0A182R5U0	Q06DG7	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
A0A182R9K9	A0A182R5U0	A0A182R9K9	A0A182R5U0	Uncharacterized protein; Belongs to the DEAD box helicase family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.718
A0A182R9K9	A0A182RF91	A0A182R9K9	A0A182RF91	Uncharacterized protein; Belongs to the DEAD box helicase family.	CSD_1 domain-containing protein.	0.710
A0A182R9K9	A0A182RFF6	A0A182R9K9	A0A182RFF6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D3.	0.699
A0A182R9K9	A0A182RQL1	A0A182R9K9	A0A182RQL1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.719
A0A182R9K9	A0A182RXI4	A0A182R9K9	A0A182RXI4	Uncharacterized protein; Belongs to the DEAD box helicase family.	OB_NTP_bind domain-containing protein.	0.688
A0A182R9K9	A0A4Y0BFJ3	A0A182R9K9	A0A4Y0BFJ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.688
A0A182R9K9	A0A4Y0BPW0	A0A182R9K9	A0A4Y0BPW0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.710