STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB27468.1HlyD family secretion protein. (339 aa)    
Predicted Functional Partners:
SKB26559.1
ATP-binding cassette, subfamily B.
 
 0.941
SKB27457.1
Peptidase C39 family protein.
 
 0.940
SKB26491.1
Protein-disulfide isomerase.
 
     0.783
SKB27450.1
Peptidase C39 family protein.
 
     0.783
SKB39878.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 0.637
SKB93319.1
Outer membrane protein, cobalt-zinc-cadmium efflux system.
  
  0.627
SKB65283.1
Outer membrane protein TolC.
  
  0.615
SKB86781.1
HmuY protein.
  
     0.584
SKB50798.1
Hypothetical protein.
  
     0.582
SKB27462.1
Hypothetical protein.
       0.569
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.