STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29206.1L-rhamnose-H+ transport protein. (360 aa)    
Predicted Functional Partners:
SKB29232.1
Sugar (pentulose or hexulose) kinase.
 
  
 0.864
SKB29211.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.785
SKB29539.1
Regulatory protein, gntR family.
 
     0.772
SKB29219.1
L-rhamnose isomerase / sugar isomerase.
 
     0.739
SKB29268.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
     0.577
SKB97065.1
Substrate-binding protein-like domain-containing protein.
 
     0.553
SKB29204.1
Hypothetical protein.
       0.501
SKB84454.1
Rhamnogalacturonyl hydrolase YesR.
  
     0.501
SKB30162.1
Inosine-uridine nucleoside N-ribohydrolase.
  
     0.491
SKB33965.1
Protein of unknown function.
  
     0.486
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.