STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29440.1Trehalose utilisation. (346 aa)    
Predicted Functional Partners:
SKB29451.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
  0.985
SKB29410.1
Putative heme-binding domain-containing protein.
 
  
  0.917
SKB29419.1
Hypothetical protein.
 
     0.899
SKB29416.1
Protein of unknown function.
 
  
  0.834
SKB29483.1
Xylose isomerase-like TIM barrel.
  
     0.771
SKB49826.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
  
  0.758
SKB26972.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
  
  0.755
SKB29492.1
Protein of unknown function.
  
     0.739
SKB33787.1
Cytochrome c, mono-and diheme variants.
  
  0.735
SKB28138.1
Putative heme-binding domain-containing protein.
  
  
  0.724
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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