STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29679.1Starch synthase. (276 aa)    
Predicted Functional Partners:
SKB77383.1
Glucose-1-phosphate adenylyltransferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
 
 0.996
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
 0.995
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
  0.970
SKB26595.1
1,4-alpha-glucan branching enzyme; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.946
SKB68719.1
4-alpha-glucanotransferase/malto- oligosyltrehalose synthase,TIGR02401.
 
 
 0.941
SKB68623.1
Maltooligosyltrehalose trehalohydrolase.
 
 
 0.920
SKB68701.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.918
SKB80877.1
Starch phosphorylase.
  
 
 0.902
SKB29685.1
Protein of unknown function.
  
    0.698
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
    0.696
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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