STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29907.1Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. (75 aa)    
Predicted Functional Partners:
SKB29910.1
Protein CcmA, bactofilin family.
       0.854
SKB29917.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
       0.723
SKB29921.1
Tetratricopeptide repeat-containing protein.
       0.667
SKB29927.1
Penicillin-binding protein 1A.
       0.603
atpB
F-type H+-transporting ATPase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
  
  
 0.570
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.555
SKB94699.1
seryl-tRNA synthetase.
   
    0.404
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.