STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30401.1Methyltransferase domain-containing protein. (290 aa)    
Predicted Functional Partners:
SKB54911.1
Amino acid adenylation domain-containing protein.
    
 0.804
SKB54901.1
Amino acid adenylation domain-containing protein.
    
 0.743
SKB55082.1
UbiA prenyltransferase family protein.
    
 0.699
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.676
SKB56359.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.646
SKB30772.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.545
SKB98518.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.538
SKB98433.1
Hypothetical protein.
  
     0.526
SKB28720.1
Transcriptional regulator, TetR family.
  
 
   0.507
SKB29515.1
4-hydroxybenzoate polyprenyltransferase.
  
  
 0.504
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.